Structures/Decoys scores

SOAP RankScore module, calculating scores on decoys.

In SOAP, recovery function scores are treated as a separate scoring term, which enables a substaintial~1000000x increase in evaluation speed.

class rankScores.dsscore(scorename='', dir='', dslist=[])[source]

Base class for decoy sets scores

class rankScores.sfdsscore(dslist=[], bm='ss1', sfm='', features='', sftype='', par='', parvalue=[], type='', **argvs)[source]

Decoy sets scores calculated using recovery function

class rankScores.spdsscore(dslist=[], bm='', ssp=<statsTable.scaledsp object>, model=[])[source]

Decoy sets scores calculated using stats tables

calc_score(runnumber, reportstatus=True)[source]

Methods to benchmark the statistical potential, run on current directory

calc_score_fromlist(dnlist)[source]

Methods to benchmark the statistical potential, run on current directory